Quick Start
You may run MSPC as a command-line application, a C# library, or an R package available from Bioconductor. In the following, we provide quick start for using MSPC as a command-line application and an R package, and provide details in their respective pages.
#
Quick Start: Command-line#
Preparation- Install a self-contained release of MSPC, using either of following commands depending on your runtime (see installation page for detailed installation options):
- Windows
- Linux
- macOS
- Extract the downloaded archive and browse to the containing directory:
- Windows
- Linux
- macOS
Notice that if you are working on Windows x64, you will need to download the program unzip.
- Download sample data:
- Windows
- Linux
- macOS
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RunTo run MSPC use the following command depending on your runtime:
- Windows
- Linux
- macOS
#
OutputMSPC creates a folder in the current execution path named session_X_Y
,
where X
and Y
are execution date and time respectively, which contains
the following files and folders:
info
Note that in these instructions you download a self-contained deployment of MSPC, hence you do not need to install .NET (or any other dependencies) for the program to execute.
For other installation options see the installation page.
#
Quick Start: R packageMSPC is also distributed as a Bioconductor package. To use in R programming language, you may take the following steps.
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Install and Load#
Runinfo
The MSPC R package can load data from files and Granges objects. For a complete documentation on the package, please refer to the bioconductor documentation.